miRBase entry: ptr-mir-1283a

Stem-loop ptr-mir-1283a


Accession
MI0008484
Description
Pan troglodytes ptr-mir-1283a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucaggcugugacUCUACAAAGGAAAGCGCUUUCUguugucagaaagaagagaaagcgcuucccuuuugaggguuacgguuugagaa
(((((((((((((((..(((((.(((((((((((.((.(.....).)).))))))))))).)))))..)))))))))))))))...

Structure
---               AC     A           g  g c 
   ucaggcugugacUCU  AAAGG AAGCGCUUUCU uu u a
   |||||||||||||||  ||||| ||||||||||| || | g
   aguuuggcauuggga  uuucc uucgcgaaaga aa a a
aag               gu     c           g  g a 


Annotation confidence Not enough data
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Genome context
chr19: 56036646-56036731 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-1283a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1283a

Accession MIMAT0008002
Description Pan troglodytes ptr-miR-1283a mature miRNA
Sequence 13 - UCUACAAAGGAAAGCGCUUUCU - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70