miRBase entry: ptr-mir-1289-1

Stem-loop ptr-mir-1289-1


Accession
MI0008489
Description
Pan troglodytes ptr-mir-1289-1 precursor miRNA
Gene family
MIPF0000626; mir-1289


Sequence

uucucaauuuuuaguaggaauuaaaaacaaaacugguaaaugcagacucuuggauuccacccccagagaaucccuaaaccgggggUGGAGUCCAGGAAUCUGCAUUUUagaaaguacccagggugauucugauacauugggaac
((((((((...((...(((((((........(((...(((((((((.(((((((((((((((((................))))))))))))))))).))))))))).....)))........)))))))..)).)))))))).

Structure
-        uuu  gua       aaaacaaa   --ggu         c                 agagaau 
 uucucaau   ua   ggaauua        acu     aaaugcaga ucuuggauuccaccccc       c
 ||||||||   ||   |||||||        |||     ||||||||| |||||||||||||||||        
 aaggguua   au   ucuuagu        uga     UUUACGUCU AGGACCUGAGGUggggg       c
c        --c  -ag       gggaccca   aagaU         A                 ccaaauc 


Annotation confidence Not enough data
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Genome context
chr20: 36898069-36898212 [-]

Database links

Mature ptr-miR-1289

Accession MIMAT0008007
Description Pan troglodytes ptr-miR-1289 mature miRNA
Sequence 86 - UGGAGUCCAGGAAUCUGCAUUUU - 108
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70