miRBase entry: ptr-mir-1289-2

Stem-loop ptr-mir-1289-2


Accession
MI0008490
Description
Pan troglodytes ptr-mir-1289-2 precursor miRNA
Gene family
MIPF0000626; mir-1289


Sequence

ccacgguccuaguuaaaaaggcacauuccuagacccugccucagaacuacugaacagagucacugggugUGGAGUCCAGGAAUCUGCAUUUUuaccccugucgcccccgc
....(((..(((.((((((.(((.((((((.(((.(((((((((.(((.((....)))))..))))).)))).))).)))))).))).))))))...)))..))).....

Structure
-ccac   cc   --u      g   c      a   c    -     -a   a  g 
     ggu  uag   uaaaaa gca auuccu gac cugc cucag  acu cu a
     |||  |||   |||||| ||| |||||| ||| |||| |||||  ||| ||  
     ccg  guc   auUUUU CGU UAAGGA CUG GGUg ggguc  uga ga a
cgccc   cu   ccc      A   C      C   A    u     ac   -  c 


Annotation confidence Not enough data
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Genome context
chr5: 133363271-133363380 [-]

Database links

Mature ptr-miR-1289

Accession MIMAT0008007
Description Pan troglodytes ptr-miR-1289 mature miRNA
Sequence 70 - UGGAGUCCAGGAAUCUGCAUUUU - 92
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70