miRBase entry: ptr-mir-1294

Stem-loop ptr-mir-1294


Accession
MI0008497
Description
Pan troglodytes ptr-mir-1294 precursor miRNA
Gene family
MIPF0000603; mir-1294


Sequence

acuuaaugugugccaagaucuguucauuuaugaucucaccgcguccUGUGAGGUUGGCAUUGUUGUCUggcauugucugauauacaacagugccaaccucacgggacucagugaggugaaacugaggauuaggaaggugua
............((..(((((..(((.((.(.(((((((.(.((((((((((((((((((((((((....((.....))....)))))))))))))))))))))))).).))))))).))).)))))))).))........

Structure
acuuaaugugug  aa     gu   u  a g       c c                        CUgg  u 
            cc  gaucu  uca uu u aucucac g guccUGUGAGGUUGGCAUUGUUGU    ca u
            ||  |||||  ||| || | ||||||| | ||||||||||||||||||||||||    || g
            gg  uuagg  agu aa a uggagug c cagggcacuccaaccgugacaaca    gu u
----auguggaa  -a     --   c  - g       a u                        uaua  c 


Annotation confidence Not enough data
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Genome context
chr5: 154598109-154598249 [+]

Database links

Mature ptr-miR-1294

Accession MIMAT0008013
Description Pan troglodytes ptr-miR-1294 mature miRNA
Sequence 47 - UGUGAGGUUGGCAUUGUUGUCU - 68
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70