miRBase entry: ptr-mir-1302-2

Stem-loop ptr-mir-1302-2


Accession
MI0008517
Description
Pan troglodytes ptr-mir-1302-2 precursor miRNA
Gene family
MIPF0000456; mir-1302

Literature search
1 open access papers mention ptr-mir-1302-2
(2 sentences)

Sequence

ggaugcccaguuaguuugaauucuagauaaacaacgaauaauuucguagcauaaauaugucccaagcuuaguUUGGGACAUACUUAUGCUAAAaaacauuauugguuguuuaucugagauucaaaauuaagcauuuu
.(((((....((((((((((((.((((((((((((.((((((....((((((((.((((((((((((...)))))))))))).))))))))......)))))).)))))))))))).))))).))))))))))))..

Structure
-g     ccag       -     c            g      --uucg        a            u 
  gaugc    uuaguuu gaauu uagauaaacaac aauaau      uagcauaa uaugucccaagc  
  |||||    ||||||| ||||| |||||||||||| ||||||      |||||||| |||||||||||| u
  uuacg    aauuaaa cuuag gucuauuuguug uuauua      AUCGUAUU AUACAGGGUUug  
uu     ----       a     a            g      caaaAA        C            a 


Annotation confidence Not enough data
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Genome context
chr12: 1666-1802 [+]

Database links

Mature ptr-miR-1302

Accession MIMAT0008021
Description Pan troglodytes ptr-miR-1302 mature miRNA
Sequence 73 - UUGGGACAUACUUAUGCUAAA - 93
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70