miRBase entry: ptr-mir-1302-5

Stem-loop ptr-mir-1302-5


Accession
MI0008520
Description
Pan troglodytes ptr-mir-1302-5 precursor miRNA
Gene family
MIPF0000456; mir-1302

Literature search
1 open access papers mention ptr-mir-1302-5
(2 sentences)

Sequence

ggaugcccaguuaguuugaauuuuagauaaacaacgaauaauuucuuagcauaaauaugucccaagcuuaguUUGGGACAUACUUAUGCUAAAaaacauuauugguuguuuaucugagauucagaauuaagcauuuu
.(((((....(((((((((((((((((((((((((.((((((((.(((((((((.((((((((((((...)))))))))))).))))))))).))..)))))).)))))))))))))))))))).))))))))))..

Structure
-g     ccag     -                    g      --  c         a            u 
  gaugc    uuagu uugaauuuuagauaaacaac aauaau  uu uuagcauaa uaugucccaagc  
  |||||    ||||| |||||||||||||||||||| ||||||  || ||||||||| |||||||||||| u
  uuacg    aauua gacuuagagucuauuuguug uuauua  aa AAUCGUAUU AUACAGGGUUug  
uu     ----     a                    g      ca  A         C            a 


Annotation confidence Not enough data
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Genome context
AACZ04049562.1: 692-828 [+]

Database links

Mature ptr-miR-1302

Accession MIMAT0008021
Description Pan troglodytes ptr-miR-1302 mature miRNA
Sequence 73 - UUGGGACAUACUUAUGCUAAA - 93
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70