miRBase entry: ptr-mir-1307

Stem-loop ptr-mir-1307


Accession
MI0008526
Description
Pan troglodytes ptr-mir-1307 precursor miRNA
Gene family
MIPF0000558; mir-1307


Sequence

caucaagacccagcugagucacugucacugccuaccaaucucgaccggaccucgaccggcucgucuguguugccaaucgACUCGGCGUGGCGUCGGUCGUGguagauaggcggucaugcauacgaauuuucagcucuuguucugguga
(((((.(((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.((((.(((..((......))..))).)))))).))..))))))).))).).))))))))...)))...))...)))))))...))).))))).

Structure
-     a   -cc       ---  -ac   --c        c a   u       -a  u  a    c   uc  ug 
 cauca gac   agcugag   uc   ugu   acugccua c auc cgaccgg  cc cg ccgg ucg  ug  u
 ||||| |||   |||||||   ||   |||   |||||||| | ||| |||||||  || || |||| |||  ||   
 guggu uug   ucgacuu   ag   acg   uggcggau g ugG GCUGGCU  GG GC GGCU Agc  ac  u
a     c   uuc       uua  cau   uac        a a   U       GC  U  -    C   ua  cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 104877580-104877727 [-]

Database links

Mature ptr-miR-1307

Accession MIMAT0008024
Description Pan troglodytes ptr-miR-1307 mature miRNA
Sequence 80 - ACUCGGCGUGGCGUCGGUCGUG - 101
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70