miRBase entry: ptr-mir-130a

Stem-loop ptr-mir-130a


Accession
MI0008527
Description
Pan troglodytes ptr-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

gcugcuggccagagcucuuuucacauugugcuacugucugcaccugucacuagCAGUGCAAUGUUAAAAGGGCAUuggccguguagug
((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).))))))).))))).

Structure
-     -       a        c          a   ucu  a 
 gcugc uggccag gcucuuuu acauugugcu cug   gc c
 ||||| ||||||| |||||||| |||||||||| |||   ||  
 ugaug gccgguU CGGGAAAA UGUAACGUGA gau   ug c
g     u       A        U          C   cac  u 


Annotation confidence Not enough data
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Genome context
chr11: 57403597-57403684 [+]

Database links

Mature ptr-miR-130a

Accession MIMAT0008025
Description Pan troglodytes ptr-miR-130a mature miRNA
Sequence 54 - CAGUGCAAUGUUAAAAGGGCAU - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70