miRBase entry: ptr-mir-130b

Stem-loop ptr-mir-130b


Accession
MI0008528
Description
Pan troglodytes ptr-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

gccugcccgacacucuuucccuguugcacuacuaugggccgcugggaagCAGUGCAAUGAUGAAAGGGCAUcggucagguc
(((((.((((..(((((((..(((((((((..........(((....))))))))))))..)))))))..)))).))))).

Structure
-     c    ca       cc         acuaugggcc   g 
 gccug ccga  cucuuuc  uguugcacu          gcu g
 ||||| ||||  |||||||  |||||||||          |||  
 uggac ggcU  GGGAAAG  GUAACGUGA          Cga g
c     u    AC       UA         ----------   a 


Annotation confidence Not enough data
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Genome context
chr22: 8063089-8063169 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-130b

Accession MIMAT0008026
Description Pan troglodytes ptr-miR-130b mature miRNA
Sequence 50 - CAGUGCAAUGAUGAAAGGGCAU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70