miRBase entry: ptr-mir-133b

Stem-loop ptr-mir-133b


Accession
MI0008534
Description
Pan troglodytes ptr-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

cucagaagaaagaugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaaugcccaguccuuggaga
.............(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))....(((.....)))...

Structure
-----cucagaagaaaga    --       c        ca  c  a      u  g    c 
                  ugcc  cccugcu uggcuggu  aa gg accaag cc ucuu  
                  ||||  ||||||| ||||||||  || || |||||| || |||| c
                  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agag  
agagguuccugacccgua    uc       c        AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
chr6: 52748412-52748529 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-133b

Accession MIMAT0008030
Description Pan troglodytes ptr-miR-133b mature miRNA
Sequence 65 - UUUGGUCCCCUUCAACCAGCUA - 86
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70