miRBase entry: ptr-mir-138

Stem-loop ptr-mir-138


Accession
MI0008539
Description
Pan troglodytes ptr-mir-138 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

guugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugcauca
(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure
- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 


Annotation confidence Not enough data
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Genome context
chr16: 47522373-47522455 [+]

Database links

Mature ptr-miR-138

Accession MIMAT0008034
Description Pan troglodytes ptr-miR-138 mature miRNA
Sequence 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70