miRBase entry: ptr-mir-148b

Stem-loop ptr-mir-148b


Accession
MI0008548
Description
Pan troglodytes ptr-mir-148b precursor miRNA
Gene family
MIPF0000056; mir-148


Sequence

caagcacgauuagcauuugaggugaaguucuguuauacacucaggcuguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucu
.......((..(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).))).)).

Structure
caagcac  uu   a                  u  a    ca    guggc 
       ga  agc uuugaggugaaguucugu au cacu  ggcu     u
       ||  ||| |||||||||||||||||| || ||||  ||||     c
       cu  ucg aagcucUGUUUCAAGACA UA GUGA  CUga     u
------u  -u   a                  C  C    --    aaguc 


Annotation confidence Not enough data
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Genome context
chr12: 35406209-35406306 [-]

Database links

Mature ptr-miR-148b

Accession MIMAT0008042
Description Pan troglodytes ptr-miR-148b mature miRNA
Sequence 63 - UCAGUGCAUCACAGAACUUUGU - 84
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70