miRBase entry: ptr-mir-149

Stem-loop ptr-mir-149


Accession
MI0008549
Description
Pan troglodytes ptr-mir-149 precursor miRNA
Gene family
MIPF0000274; mir-149


Sequence

ccggcgcccgagcUCUGGCUCCGUGUCUUCACUCCCgugcuuguccgaggagggagggagggacgggggcugugcuggggc
.....((((.(((.(.(.((((((.(((((.(((((.(.(((....))).))))))))))).)))))).).).))).))))

Structure
ccggc    g   U U G      G     A     g g   g 
     gccc agc C G CUCCGU UCUUC CUCCC u cuu u
     |||| ||| | | |||||| ||||| ||||| | |||  
     cggg ucg g c ggggca ggagg gaggg a gag c
-----    g   u u g      g     -     - g   c 


Annotation confidence Not enough data
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Genome context
chr2B: 131620734-131620814 [+]

Database links

Mature ptr-miR-149

Accession MIMAT0008043
Description Pan troglodytes ptr-miR-149 mature miRNA
Sequence 14 - UCUGGCUCCGUGUCUUCACUCCC - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70