miRBase entry: ptr-mir-16-2

Stem-loop ptr-mir-16-2


Accession
MI0008555
Description
Pan troglodytes ptr-mir-16-2 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

uuccacucUAGCAGCACGUAAAUAUUGGCGuagugaaauauauguuaaacaccaauauuacugugcugcuuuagugugac
.((((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).)).

Structure
u  -    cU         UA        C  agugaaa 
 uc cacu  AGCAGCACG  AAUAUUGG Gu       u
 || ||||  |||||||||  |||||||| ||       a
 ag guga  ucgucgugu  uuauaacc ca       u
c  u    uu         ca        a  aauugua 


Annotation confidence Not enough data
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Genome context
chr3: 164010702-164010781 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-16-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-16

Accession MIMAT0002655
Description Pan troglodytes ptr-miR-16 mature miRNA
Sequence 9 - UAGCAGCACGUAAAUAUUGGCG - 30
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70