miRBase entry: ptr-mir-181b-2

Stem-loop ptr-mir-181b-2


Accession
MI0008556
Description
Pan troglodytes ptr-mir-181b-2 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

ugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUuugagucugaaucaacucacugaucgaugaaugcaaacugcggaccaaaca
...((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure
-uga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguagc  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 


Annotation confidence Not enough data
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Genome context
chr9: 102768161-102768248 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-181b

Accession MIMAT0002625
Description Pan troglodytes ptr-miR-181b mature miRNA
Sequence 15 - AACAUUCAUUGCUGUCGGUGGGU - 37
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70