miRBase entry: ptr-mir-182

Stem-loop ptr-mir-182


Accession
MI0008558
Description
Pan troglodytes ptr-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182


Sequence

gagcugcuugccucccuccguuUUUGGCAAUGGUAGAACUCACACUggugagguaacaggauccggugguucuagacuugccaacuauggggcgaggacucagccggca
..((((((.(((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).)))).)..)).)))).

Structure
ga    -  -u -    c      uU       UGG      UCA      ugaggu 
  gcug cu  g ccuc cuccgu  UUGGCAA   UAGAAC   CACUgg      a
  |||| ||  | |||| ||||||  |||||||   ||||||   ||||||       
  cggc ga  c ggag ggggua  aaccguu   aucuug   guggcc      a
-a    c  cu a    c      uc       cag      ---      uaggac 


Annotation confidence Not enough data
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Genome context
chr7: 134293100-134293208 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-182

Accession MIMAT0008050
Description Pan troglodytes ptr-miR-182 mature miRNA
Sequence 23 - UUUGGCAAUGGUAGAACUCACACU - 46
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70