miRBase entry: ptr-mir-18b

Stem-loop ptr-mir-18b


Accession
MI0008562
Description
Pan troglodytes ptr-mir-18b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

uguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucuacugcccuaaaugccccuucuggc
.((...((((.((((.(((.(((((.((................))))))).))).)))).))))...))

Structure
u  guU    U    C   U     U  ugaagca 
 gu   AAGG GCAU UAG GCAGU AG       g
 ||   |||| |||| ||| ||||| ||        
 cg   uucc cgua auc cguca uc       c
-  guc    c    a   c     -  uaagauu 


Annotation confidence Not enough data
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Genome context
chrX: 134038262-134038331 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-18b

Accession MIMAT0008054
Description Pan troglodytes ptr-miR-18b mature miRNA
Sequence 6 - UAAGGUGCAUCUAGUGCAGUUAG - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70