miRBase entry: ptr-mir-193a

Stem-loop ptr-mir-193a


Accession
MI0008566
Description
Pan troglodytes ptr-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

cgaggaugggagcugagggcugggucuuugcgggcgagaugagggugucggaucAACUGGCCUACAAAGUCCCAGUucucggccccc
.......(((.(((((((((((((.(((((.((((.((.(((..........))).)).)))).))))).)))))))))))))))).

Structure
cgaggau   a             u     c    g  a   gggu 
       ggg gcugagggcuggg cuuug gggc ag uga    g
       ||| ||||||||||||| ||||| |||| || |||     
       ccc cggcucuUGACCC GAAAC UCCG UC Acu    u
------c   -             U     A    G  A   aggc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 25947439-25947525 [-]

Database links

Mature ptr-miR-193a

Accession MIMAT0008058
Description Pan troglodytes ptr-miR-193a mature miRNA
Sequence 55 - AACUGGCCUACAAAGUCCCAGU - 76
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70