miRBase entry: ptr-mir-195

Stem-loop ptr-mir-195


Accession
MI0008568
Description
Pan troglodytes ptr-mir-195 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

agcuucccuggcucUAGCAGCACAGAAAUAUUGGCacagggaagcgagucugccaauauuggcugugcugcuccaggcaggguggu
.(((.(((((.((..((((((((((.((((((((((..((........))))))))))))..))))))))))..)).))))).)))

Structure
a   u     g  cU          -A          ca  gaa 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa  gg   g
 ||| ||||| ||  ||||||||||  ||||||||||  ||    
 ugg gggac ga  ucgucguguc  uuauaaccgu  cu   c
-   u     g  cc          gg          --  gag 


Annotation confidence Not enough data
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Genome context
chr17: 7272655-7272740 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-195
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-195

Accession MIMAT0008060
Description Pan troglodytes ptr-miR-195 mature miRNA
Sequence 15 - UAGCAGCACAGAAAUAUUGGC - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70