miRBase entry: ptr-mir-196a-1

Stem-loop ptr-mir-196a-1


Accession
MI0008569
Description
Pan troglodytes ptr-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ugaauUAGGUAGUUUCAUGUUGUUGGGccuggguuucugaacacaacaacauuaaaccacccgauucac
((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))).

Structure
-      A   A    C         - Gc ugg 
 ugaauU GGU GUUU AUGUUGUUG G  c   g
 |||||| ||| |||| ||||||||| |  |   u
 acuuag cca caaa uacaacaac c  g   u
c      c   c    u         a aa ucu 


Annotation confidence Not enough data
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Genome context
chr17: 9199428-9199496 [+]

Database links

Mature ptr-miR-196a

Accession MIMAT0002522
Description Pan troglodytes ptr-miR-196a mature miRNA
Sequence 6 - UAGGUAGUUUCAUGUUGUUGGG - 27
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70