miRBase entry: ptr-mir-20b

Stem-loop ptr-mir-20b


Accession
MI0008579
Description
Pan troglodytes ptr-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

aguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcaugacucuacuguaguaugggcacuuccaguac
.((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))

Structure
a    -CA           G     -GU    uu 
 guac   AAGUGCUCAUA UGCAG   AGuu  g
 ||||   ||||||||||| |||||   ||||  g
 caug   uucacggguau auguc   ucag  c
-    acc           g     auc    ua 


Annotation confidence Not enough data
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Genome context
chrX: 134038030-134038097 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-20b

Accession MIMAT0008069
Description Pan troglodytes ptr-miR-20b mature miRNA
Sequence 6 - CAAAGUGCUCAUAGUGCAGGUAG - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70