miRBase entry: ptr-mir-217

Stem-loop ptr-mir-217


Accession
MI0008583
Description
Pan troglodytes ptr-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

aguauaauuauuacauaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAuaagaaucagucaccaucaguuccuaaugcauugccuucagcaucuaaacaa
.(((.......)))...((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))..

Structure
aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
---------------aa    -u     a u  c  u     a          c a   acu 


Annotation confidence Not enough data
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Genome context
chr2A: 57250915-57251023 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-217

Accession MIMAT0008073
Description Pan troglodytes ptr-miR-217 mature miRNA
Sequence 35 - UACUGCAUCAGGAACUGAUUGGA - 57
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70