miRBase entry: ptr-mir-219-1

Stem-loop ptr-mir-219-1


Accession
MI0008584
Description
Pan troglodytes ptr-mir-219-1 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

cgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucuauggcuccggcugAGAGUUGAGUCUGGACGUCCCGagccgccgcccccaaaccucgagcgg
(((.(.((((.(((((((..(((.(((((.((.((((((((.((((.........)))))))))))).)).))))))))..))))))).)))).........).))).

Structure
-   c --------c    c       cU   U     A  G        g    uau 
 cgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUc aguc   g
 ||| |         |||| |||||||  ||| ||||| || |||||||| ||||   g
 gcg g         cccg cgccgaG  CUG CAGGU UG GUUGAGAg ucgg   c
g   a cuccaaacc    c       CC   -     C  A        -    ccu 


Annotation confidence Not enough data
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Genome context
chr6: 33533148-33533255 [+]

Database links

Mature ptr-miR-219-5p

Accession MIMAT0009193
Description Pan troglodytes ptr-miR-219-5p mature miRNA
Sequence 20 - UGAUUGUCCAAACGCAAUUCU - 40
Evidence not_experimental

Mature ptr-miR-219-1-3p

Accession MIMAT0008074
Description Pan troglodytes ptr-miR-219-1-3p mature miRNA
Sequence 61 - AGAGUUGAGUCUGGACGUCCCG - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70