miRBase entry: ptr-mir-221

Stem-loop ptr-mir-221


Accession
MI0008587
Description
Pan troglodytes ptr-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

ugaacauccaggucuggggcaugaaccuggcauacaauguagauuucuguguucguuaggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccuggaaacauguucu
.((((((((((((....(((.(((((((((((.(((((((((....(((((((.....))).))))))))))))).))))))).)))).))))))))))....))))).

Structure
u     ----       cugg   a    -       u         auuu    -   c 
 gaaca    uccaggu    ggc ugaa ccuggca acaauguag    cugu guu g
 |||||    |||||||    ||| |||| ||||||| |||||||||    |||| ||| u
 cuugu    aggucca    ucg aCUU GGGUCGU UGUUACAUC    GAca cgg u
u     acaa       ----   g    U       C         ----    a   a 


Annotation confidence Not enough data
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Genome context
chrX: 45931544-45931652 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-221

Accession MIMAT0008076
Description Pan troglodytes ptr-miR-221 mature miRNA
Sequence 65 - AGCUACAUUGUCUGCUGGGUUUC - 87
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70