miRBase entry: ptr-mir-27b

Stem-loop ptr-mir-27b


Accession
MI0008591
Description
Pan troglodytes ptr-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

ccucucuaacaaggugcagagcuuagcugauuggugaacagugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggug
(((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))..

Structure
--   -    aaca                 g    g       ugau   u 
  ccu cucu    aggugcagagcuuagcu auug ugaacag    ugg  
  ||| ||||    ||||||||||||||||| |||| |||||||    ||| u
  gga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
gu   a    --ag                 -    -       --uc   u 


Annotation confidence Not enough data
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Genome context
chr9: 72783972-72784067 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-27b

Accession MIMAT0008078
Description Pan troglodytes ptr-miR-27b mature miRNA
Sequence 60 - UUCACAGUGGCUAAGUUCUGC - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70