miRBase entry: ptr-mir-296

Stem-loop ptr-mir-296


Accession
MI0008592
Description
Pan troglodytes ptr-mir-296 precursor miRNA
Gene family
MIPF0000159; mir-296


Sequence

aggacccuuccggagggcccccccucaauccuguugugccuaauucaGAGGGUUGGGUGGAGGCUCUCCugaagggcuc
.((.((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).)))))))).

Structure
a  a      c        c  c         g   ugc 
 gg cccuuc ggagggcc cc cucaauccu uug   c
 || |||||| |||||||| || ||||||||| |||   u
 uc gggaag CCUCUCGG GG GGGUUGGGA Gac   a
c  -      u        A  U         -   uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr20: 60836580-60836658 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-296
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-296

Accession MIMAT0008079
Description Pan troglodytes ptr-miR-296 mature miRNA
Sequence 48 - GAGGGUUGGGUGGAGGCUCUCC - 69
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70