miRBase entry: ptr-mir-298

Stem-loop ptr-mir-298


Accession
MI0008594
Description
Pan troglodytes ptr-mir-298 precursor miRNA
Gene family
MIPF0000206; mir-298


Sequence

ucaggucuucAGCAGAAGCAGGGAGGUUCUCCCAgugguuuuccuugacugugaggaacuagccugcugcuuugcucaggagugagc
(((..((((.((((((((((((..((((((.(((((.(.......).)))).).))))))..))))))..)))))).)))).)))..

Structure
--   gg    c      --      GA      C -    g uu 
  uca  ucuu AGCAGA  AGCAGG  GGUUCU C CAgu g  u
  |||  |||| ||||||  ||||||  |||||| | |||| |  u
  agu  agga ucguuu  ucgucc  ucaagg g guca u  c
cg   -g    c      cg      ga      a u    g uc 


Annotation confidence Not enough data
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Genome context
chr20: 60837191-60837277 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-298
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-298

Accession MIMAT0008081
Description Pan troglodytes ptr-miR-298 mature miRNA
Sequence 11 - AGCAGAAGCAGGGAGGUUCUCCCA - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70