miRBase entry: ptr-mir-29c

Stem-loop ptr-mir-29c


Accession
MI0008595
Description
Pan troglodytes ptr-mir-29c precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

aucucuuacacaggcugaccgauuucuccugguguucagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggg
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))).

Structure
au        -  ggc           ucc       c   gucu 
  cucuuaca ca   ugaccgauuuc   ugguguu aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
-g        a  ---           UUU       -   guuu 


Annotation confidence Not enough data
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Genome context
chr1: 186692183-186692269 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-29c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-29c

Accession MIMAT0008082
Description Pan troglodytes ptr-miR-29c mature miRNA
Sequence 54 - UAGCACCAUUUGAAAUCGGUUA - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70