miRBase entry: ptr-mir-300

Stem-loop ptr-mir-300


Accession
MI0008596
Description
Pan troglodytes ptr-mir-300 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

gcuacuugaagagagguaauccuucaugcauuugcuuuacuugcaaugauUAUACAAGGGCAGACUCUCUCUggggagcaaa
(((.((((.((((((....(((((....((((.((.......)))))).......)))))....)))))).)))).)))...

Structure
---   a    a      guaa     ---caug    u  uu 
   gcu cuug agagag    uccuu       cauu gc  u
   ||| |||| ||||||    |||||       |||| ||  a
   cga gggU UCUCUC    GGGAA       guaa cg  c
aaa   g    C      AGAC     CAUAUua    -  uu 


Annotation confidence Not enough data
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Genome context
chr14: 86289611-86289692 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-300
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-300

Accession MIMAT0008083
Description Pan troglodytes ptr-miR-300 mature miRNA
Sequence 51 - UAUACAAGGGCAGACUCUCUCU - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70