miRBase entry: ptr-mir-301b

Stem-loop ptr-mir-301b


Accession
MI0008598
Description
Pan troglodytes ptr-mir-301b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

ccgcaggugcucugacgagguugcacuacugugcucugagaagCAGUGCAAUGAUAUUGUCAAAGCaucugggacca
((.((((((((.((((((.((((((((.((...........)).))))))))....)))))).))))))))))....

Structure
----  g        c      ---g        a  gugc 
    cc caggugcu ugacga    guugcacu cu    u
    || |||||||| ||||||    |||||||| ||    c
    gg gucuaCGA ACUGUU    UAACGUGA ga    u
acca  -        A      AUAG        C  agag 


Annotation confidence Not enough data
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Genome context
chr22: 8062768-8062844 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-301b

Accession MIMAT0008085
Description Pan troglodytes ptr-miR-301b mature miRNA
Sequence 44 - CAGUGCAAUGAUAUUGUCAAAGC - 66
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70