miRBase entry: ptr-mir-302a

Stem-loop ptr-mir-302a


Accession
MI0008599
Description
Pan troglodytes ptr-mir-302a precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

ccaccacuuaaacguggauguacuugcuuugaaacuaaagaagUAAGUGCUUCCAUGUUUUGGUGAug
.(((((...(((((((((.(((((((((((.........))))))))))).))))))))))))))...

Structure
--c     cuu         u           gaa 
   cacca   aaacgugga guacuugcuuu   a
   |||||   ||||||||| |||||||||||   c
   GUGGU   UUUGUACCU CGUGAAUgaag   u
guA     ---         U           aaa 


Annotation confidence Not enough data
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Genome context
chr4: 115711478-115711545 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-302a

Accession MIMAT0008086
Description Pan troglodytes ptr-miR-302a mature miRNA
Sequence 44 - UAAGUGCUUCCAUGUUUUGGUGA - 66
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70