miRBase entry: ptr-mir-302c

Stem-loop ptr-mir-302c


Accession
MI0008601
Description
Pan troglodytes ptr-mir-302c precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

ccuuugcuuuaacauggggguaccugcugugugaaacaaaagUAAGUGCUUCCAUGUUUCAGUGGag
.(((((((..(((((((((((((.((((.(((...)))..)))).)))))))))))))..)))))))

Structure
c       uu             c    -g   g 
 cuuugcu  aacauggggguac ugcu  ugu  
 |||||||  ||||||||||||| ||||  ||| a
 gaGGUGA  UUGUACCUUCGUG AUga  aca  
-       CU             A    aa   a 


Annotation confidence Not enough data
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Genome context
chr4: 115711658-115711724 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-302c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-302c

Accession MIMAT0008088
Description Pan troglodytes ptr-miR-302c mature miRNA
Sequence 43 - UAAGUGCUUCCAUGUUUCAGUGG - 65
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70