miRBase entry: ptr-mir-30c-1

Stem-loop ptr-mir-30c-1


Accession
MI0008605
Description
Pan troglodytes ptr-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
2 open access papers mention ptr-mir-30c-1
(2 sentences)

Sequence

ccaugcuguagugugUGUAAACAUCCUACACUCUCAGCugugagcucaagguggcugggagaggguuguuuacuccuucugccaugga
(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure
-     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
a     --    uuc u       u   --a         ----   a 


Annotation confidence Not enough data
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Genome context
chr1: 40188188-40188275 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-30c

Accession MIMAT0002614
Description Pan troglodytes ptr-miR-30c mature miRNA
Sequence 16 - UGUAAACAUCCUACACUCUCAGC - 38
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70