miRBase entry: ptr-mir-30e

Stem-loop ptr-mir-30e


Accession
MI0008606
Description
Pan troglodytes ptr-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention ptr-mir-30e
(1 sentences)

Sequence

ggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguucagaggagcuuucagucggauguuuacagcggcaggcugcca
((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure
-        uu   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg gacauuuguagg  cugacuuucga g   c u
a        --   c            --           g aga u 


Annotation confidence Not enough data
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Genome context
chr1: 40185260-40185350 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-30e

Accession MIMAT0008092
Description Pan troglodytes ptr-miR-30e mature miRNA
Sequence 16 - UGUAAACAUCCUUGACUGGAAG - 37
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70