miRBase entry: ptr-mir-320b-2

Stem-loop ptr-mir-320b-2


Accession
MI0008609
Description
Pan troglodytes ptr-mir-320b-2 precursor miRNA
Gene family
MIPF0000163; mir-320

Literature search
1 open access papers mention ptr-mir-320b-2
(8 sentences)

Sequence

uguuauuuuuugucuucuaccuaagaauucugucucuuaggcuuucucuucccagauuucccaaaguugggAAAAGCUGGGUUGAGAGGGCAAaaggaaaaaaaaagaauucugucucugacauaauuagauaggga
(.((((((..((((.........((((((((...((((..((((((((..(((((.(((((((....)))))))..)))))..))))))))..))))........))))))))......)))).....)))))).).

Structure
- g      ---uu    uucuaccua        -----guc    ag        uu     -a       a 
 u uuauuu     uguc         agaauucu        ucuu  gcuuucuc  cccag  uuuccca a
 | ||||||     ||||         ||||||||        ||||  ||||||||  |||||  |||||||  
 g gauaga     acag         ucuuaaga        ggaa  CGGGAGAG  GGGUC  AAAgggu g
a g      uuaau    ---ucucug        aaaaaaaa    AA        UU     GA       u 


Annotation confidence Not enough data
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Genome context
chr1: 203209046-203209182 [-]

Database links

Mature ptr-miR-320b

Accession MIMAT0008094
Description Pan troglodytes ptr-miR-320b mature miRNA
Sequence 72 - AAAAGCUGGGUUGAGAGGGCAA - 93
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70