miRBase entry: ptr-mir-323

Stem-loop ptr-mir-323


Accession
MI0008615
Description
Pan troglodytes ptr-mir-323 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ugguacuuggagagaggugguccguggcgcguucgcuuuauuuauggcgCACAUUACACGGUCGACCUCUuugcaguaucuaauc
.((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure
----u      u g        g u     gc c  u    uua 
     gguacu g agagaggu g ccgug  g gu cgcu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuauga c uuUCUCCA C GGCAC  U CA gcgg   u
cuaau      - g        G U     AU A  C    uau 


Annotation confidence Not enough data
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Genome context
chr14: 86274233-86274317 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-323
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-323

Accession MIMAT0008097
Description Pan troglodytes ptr-miR-323 mature miRNA
Sequence 50 - CACAUUACACGGUCGACCUCU - 70
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70