miRBase entry: ptr-mir-330

Stem-loop ptr-mir-330


Accession
MI0008621
Description
Pan troglodytes ptr-mir-330 precursor miRNA
Gene family
MIPF0000200; mir-330


Sequence

cuuuggcgaucacugccucucugggccugugucuuaggcucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcagcgcucugcc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).)))

Structure
cuuu   -  u a           --    -    u   ag    ugcaa 
    ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
----   u  c c           GU    C    -   -A    ccaac 


Annotation confidence Not enough data
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Genome context
chr19: 47754305-47754397 [-]

Database links

Mature ptr-miR-330

Accession MIMAT0008102
Description Pan troglodytes ptr-miR-330 mature miRNA
Sequence 57 - GCAAAGCACACGGCCUGCAGAGA - 79
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70