miRBase entry: ptr-mir-338

Stem-loop ptr-mir-338


Accession
MI0008625
Description
Pan troglodytes ptr-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

ucuccaacaauauccuggugcugagugaugacucaggcgacUCCAGCAUCAGUGAUUUUGUUGaag
....((((((.(((((((((((((((.............))).))))))))).))).))))))...

Structure
ucuc      u   -         -   gauga 
    caacaa auc cuggugcug agu     c
    |||||| ||| ||||||||| |||     u
    GUUGUU UAG GACUACGAC Uca     c
-gaa      U   U         C   gcgga 


Annotation confidence Not enough data
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Genome context
chr17: 80830870-80830935 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-338
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-338

Accession MIMAT0008106
Description Pan troglodytes ptr-miR-338 mature miRNA
Sequence 42 - UCCAGCAUCAGUGAUUUUGUUG - 63
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70