miRBase entry: ptr-mir-33b

Stem-loop ptr-mir-33b


Accession
MI0008627
Description
Pan troglodytes ptr-mir-33b precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

cgggcggccccgcgGUGCAUUGCUGUUGCAUUGCacgugugugaggcgggugcagugccucggcagugcagcccggagccggccccuggcaccac
.(((((((.(((.((((((((((((..(((((((((.(((.....))).)))))))))..)))))))))).))))).))).))))..........

Structure
---------c    -   c   c  -          UU         g   g 
          gggc ggc ccg gG UGCAUUGCUG  GCAUUGCac ugu u
          |||| ||| ||| || ||||||||||  ||||||||| ||| g
          cccg ccg ggc cc acgugacggc  cgugacgug gcg a
caccacgguc    g   a   -  g          uc         g   g 


Annotation confidence Not enough data
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Genome context
chr17: 39817932-39818026 [+]

Database links

Mature ptr-miR-33b

Accession MIMAT0008108
Description Pan troglodytes ptr-miR-33b mature miRNA
Sequence 15 - GUGCAUUGCUGUUGCAUUGC - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70