miRBase entry: ptr-mir-342

Stem-loop ptr-mir-342


Accession
MI0008629
Description
Pan troglodytes ptr-mir-342 precursor miRNA
Gene family
MIPF0000190; mir-342


Sequence

aaacugggcucaaggugaggggugcuaucugugauugagggacauggcuaauggaauugUCUCACACAGAAAUCGCACCCGUcaccuuggccuacuua
....(((((.((((((((.((((((..((((((.....((((((...((...))...)))))).))))))....)))))).)))))))))))))....

Structure
aaac     u        g      --ua      auuga      ugg  a 
    ugggc caagguga gggugc    ucugug     gggaca   cu  
    ||||| |||||||| ||||||    ||||||     ||||||   || a
    auccg guuccacU CCCACG    AGACAC     CUCUgu   gg  
auuc     -        G      CUAA      ----A      uaa  u 


Annotation confidence Not enough data
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Genome context
chr14: 85331362-85331459 [+]

Database links

Mature ptr-miR-342

Accession MIMAT0008110
Description Pan troglodytes ptr-miR-342 mature miRNA
Sequence 60 - UCUCACACAGAAAUCGCACCCGU - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70