miRBase entry: ptr-mir-365-1

Stem-loop ptr-mir-365-1


Accession
MI0008636
Description
Pan troglodytes ptr-mir-365-1 precursor miRNA
Gene family
MIPF0000061; mir-365


Sequence

ccgcagggaaaaugagggacuuuugggggcagauguguuuccauuccacuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugca
..((((((..((((((((..(((((((((((((((((.........))).)))....))))))))))).))))))))..)))))).

Structure
cc      aa        ac           ----   -   uuu 
  gcaggg  aaugaggg  uuuugggggca    gau gug   c
  ||||||  ||||||||  |||||||||||    ||| |||   c
  cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
-a      cg        -A           AAUa   u   cuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr16: 14756979-14757064 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-365-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-365

Accession MIMAT0008117
Description Pan troglodytes ptr-miR-365 mature miRNA
Sequence 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70