miRBase entry: ptr-mir-376a-1

Stem-loop ptr-mir-376a-1


Accession
MI0008646
Description
Pan troglodytes ptr-mir-376a-1 precursor miRNA
Gene family
MIPF0000091; mir-368


Sequence

aaaagguagauucuccuucuaugaguacauuauuuaugauuaAUCAUAGAGGAAAAUCCACGUuuuc
((((.((.((((.((((.((((((...(((.....))).....)))))))))).)))).)).)))).

Structure
-    g  a    c    u      --gua   u 
 aaaa gu gauu uccu cuauga     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 


Annotation confidence Not enough data
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Genome context
chr14: 86289030-86289096 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-376a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-376a

Accession MIMAT0008126
Description Pan troglodytes ptr-miR-376a mature miRNA
Sequence 43 - AUCAUAGAGGAAAAUCCACGU - 63
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70