miRBase entry: ptr-mir-376a-2

Stem-loop ptr-mir-376a-2


Accession
MI0008647
Description
Pan troglodytes ptr-mir-376a-2 precursor miRNA
Gene family
MIPF0000091; mir-368


Sequence

guauuuaaaagguagauuuuccuucuaugguuacguguuugaugguuaAUCAUAGAGGAAAAUCCACGUuuucaguauc
(((((.((((.((.(((((((((.((((((((((((.....)))..)))))))))))))))))).)).)))).))))).

Structure
-     u    g  a         u         --   g 
 guauu aaaa gu gauuuuccu cuaugguua  cgu u
 ||||| |||| || ||||||||| |||||||||  ||| u
 uauga uuuU CA CUAAAAGGA GAUACUAau  gua u
c     c    G  C         -         ug   g 


Annotation confidence Not enough data
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Genome context
chr14: 86288317-86288395 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-376a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-376a

Accession MIMAT0008126
Description Pan troglodytes ptr-miR-376a mature miRNA
Sequence 49 - AUCAUAGAGGAAAAUCCACGU - 69
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70