miRBase entry: ptr-mir-376b

Stem-loop ptr-mir-376b


Accession
MI0008648
Description
Pan troglodytes ptr-mir-376b precursor miRNA
Gene family
MIPF0000091; mir-368


Sequence

aguccuucuuugguauuuaaaacguggauauuccuucuauguuuacgugauuccugguuaAUCAUAGAGGAAAAUCCAUGUUuucaguaucaaaugcug
........(((((((((.(((((((((((.(((((.(((((...((..........))....)))))))))).))))))))))).))))))))).....

Structure
aguccuuc         u           a     u     -uuu  guga 
        uuugguauu aaaacguggau uuccu cuaug    ac    u
        ||||||||| ||||||||||| ||||| |||||    ||     
        aaacuauga uuUUGUACCUA AAGGA GAUAC    ug    u
---gucgu         c           A     -     UAau  gucc 


Annotation confidence Not enough data
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Genome context
chr14: 86288684-86288782 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-376b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-376b

Accession MIMAT0008127
Description Pan troglodytes ptr-miR-376b mature miRNA
Sequence 61 - AUCAUAGAGGAAAAUCCAUGUU - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70