miRBase entry: ptr-mir-377

Stem-loop ptr-mir-377


Accession
MI0008650
Description
Pan troglodytes ptr-mir-377 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ugagcagagguugcccuuggugaauucgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGUuug
.((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure
u              c   -    a    - uuu 
 gagcagagguugcc uug guga uucg c   a
 |||||||||||||| ||| |||| |||| |   u
 uuUGUUUUCAACGG AAC CACU Aagu g   u
g              A   A    -    u uau 


Annotation confidence Not enough data
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Genome context
chr14: 86310299-86310366 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ptr-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-377

Accession MIMAT0008129
Description Pan troglodytes ptr-miR-377 mature miRNA
Sequence 44 - AUCACACAAAGGCAACUUUUGU - 65
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70