miRBase entry: ptr-mir-379

Stem-loop ptr-mir-379


Accession
MI0008652
Description
Pan troglodytes ptr-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

gagaUGGUAGACUAUGGAACGUAGGcguuaugauuucugaccuauguaacaugguccacuaacucu
(((.((((.(((((((..(((((((((..........)).)))))))..))))))).)))).))).

Structure
-   a    A       GA       -  uuau 
 gag UGGU GACUAUG  ACGUAGG cg    g
 ||| |||| |||||||  ||||||| ||     
 cuc auca cugguac  uguaucc gu    a
u   a    c       aa       a  cuuu 


Annotation confidence Not enough data
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Genome context
chr14: 86270569-86270634 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-379

Accession MIMAT0008131
Description Pan troglodytes ptr-miR-379 mature miRNA
Sequence 5 - UGGUAGACUAUGGAACGUAGG - 25
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70