Stem-loop ptr-mir-379

Accession

MI0008652

Description

Pan troglodytes ptr-mir-379 precursor miRNA

Literature search

2 open access papers mention ptr-mir-379
(5 sentences)

Sequence

14663 reads, 121.0 reads per million, 24 experiments

gagaUGGUAGACUAUGGAACGUAGGcguuaugauuucugaccUAUGUAACAUGGUCCACUAACUCu
(((.((((.(((((((..(((((((((..........)).)))))))..))))))).)))).))).

Structure

-   a    A       GA       -  uuau 
 gag UGGU GACUAUG  ACGUAGG cg    g
 ||| |||| |||||||  ||||||| ||     
 CUC AUCA CUGGUAC  UGUAUcc gu    a
u   A    C       AA       a  cuuu 

Annotation confidence High

Genome context

chr14: 86270569-86270634 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ptr-mir-379

Mature ptr-miR-379-5p

• Accession: MIMAT0008131
• Description: Pan troglodytes ptr-miR-379-5p mature miRNA
• Sequence: 5 - UGGUAGACUAUGGAACGUAGG - 25
• Evidence: not_experimental

Mature ptr-miR-379-3p

• Accession: MIMAT0052351
• Description: Pan troglodytes ptr-miR-379-3p mature miRNA
• Sequence: 43 - UAUGUAACAUGGUCCACUAACUC - 65
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70