miRBase entry: ptr-mir-380

Stem-loop ptr-mir-380


Accession
MI0008653
Description
Pan troglodytes ptr-mir-380 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

agaugguugaccauagaacaugcgcuaucucugugucgUAUGUAAUAUGGUCCACAUCUU
(((((...(((((((..(((((((.(((....))).)))))))..)))))))..))))).

Structure
-     guu       ga       c   c 
 agaug   gaccaua  acaugcg uau u
 |||||   |||||||  ||||||| |||  
 UCUAC   CUGGUAU  UGUAUgc gug c
U     -AC       AA       u   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 86273518-86273577 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-380

Accession MIMAT0008132
Description Pan troglodytes ptr-miR-380 mature miRNA
Sequence 39 - UAUGUAAUAUGGUCCACAUCUU - 60
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70