miRBase entry: ptr-mir-382

Stem-loop ptr-mir-382


Accession
MI0008655
Description
Pan troglodytes ptr-mir-382 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

acuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgaaucauucacggacaacacuuuuuucagua
..(((((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))..

Structure
ac         -A           UG      - uuu 
  uugaagaGA  GUUGUUCGUGG  GAUUCG c   a
  |||||||||  |||||||||||  |||||| |   c
  gacuuuuuu  caacaggcacu  cuaagc g   u
au         ca           ua      a uau 


Annotation confidence Not enough data
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Genome context
chr14: 86302540-86302614 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ptr-mir-382
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-382

Accession MIMAT0008134
Description Pan troglodytes ptr-miR-382 mature miRNA
Sequence 10 - GAAGUUGUUCGUGGUGGAUUCG - 31
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70