miRBase entry: ptr-mir-409

Stem-loop ptr-mir-409


Accession
MI0008657
Description
Pan troglodytes ptr-mir-409 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

gguacucggggagagguuacccgagcaacuuugcaucuggacgacGAAUGUUGCUCGGUGAACCCCUuuucgguauca
(((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))).

Structure
-     u       a    ac         -    - auc 
 gguac cggggag gguu  ccgagcaac uuug c   u
 ||||| ||||||| ||||  ||||||||| |||| |    
 cuaug gcuuuUC CCAA  GGCUCGUUG AAGc g   g
a     -       C    GU         U    a cag 


Annotation confidence Not enough data
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Genome context
chr14: 86313550-86313627 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ptr-mir-409
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-409

Accession MIMAT0008136
Description Pan troglodytes ptr-miR-409 mature miRNA
Sequence 46 - GAAUGUUGCUCGGUGAACCCCU - 67
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70