miRBase entry: ptr-mir-411

Stem-loop ptr-mir-411


Accession
MI0008659
Description
Pan troglodytes ptr-mir-411 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

gguacuuggagagaUAGUAGACCGUAUAGCGUACGcuuuaucugugacguauguaacacgguccacuaacccucaguaucaaauccauccccgag
((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))))))))...............

Structure
---------------      ug   a a    A      AUA       - uuu 
               gguacu  gag g UAGU GACCGU   GCGUACG c   a
               ||||||  ||| | |||| ||||||   ||||||| |   u
               cuauga  cuc c auca cuggca   uguaugc g   c
gagccccuaccuaaa      --   c a    c      caa       a ugu 


Annotation confidence Not enough data
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Genome context
chr14: 86271826-86271920 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-411
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-411

Accession MIMAT0008138
Description Pan troglodytes ptr-miR-411 mature miRNA
Sequence 15 - UAGUAGACCGUAUAGCGUACG - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70